Tag: cancer research

  • Biology Graduate Marc Hetu on His Research Experience at Acadia

    Biology Graduate Marc Hetu on His Research Experience at Acadia

    A 2014 graduate from Acadia’s biology department, Marc Hetu now works in Acadia professor Dr. Sherri McFarland’s chemistry lab. He really enjoys his work there which focuses on the exciting field of light activated anti-cancer drugs. The field, called photodynamic therapy (PDT) attempts to find cancer treatment drugs, called photosensitizers (PS), that are non-toxic in the dark so that they can be administered under normal conditions that won’t harm the rest of the body but can kill cancer under specific conditions. This is a priority because the major issue with current cancer treatments, such as chemo and radiation therapy, is that they are a source of constant toxicity throughout the body, harming both cancerous and healthy cells. The key characteristic of light activated anti-cancer drugs is that they are relatively non-toxic in the dark but once you shine a certain wavelength of light on them, their anti-cancer activity is activated. This would allow for targeted treatment to specific areas of the body that need it by simply shining light on the affected parts. By leaving healthy parts of the body in the dark, they remain unaffected.

    There are a few molecular mechanisms by which this can be done with the most well documented being singlet oxygen generation. The PS, in the presence of light, activates oxygen in the cells to transition from a triplet state to a singlet state. Oxygen in its singlet state  is highly cytotoxic, destroying all cancer cells in the near vicinity. However, this singlet oxygen mechanism has limitations. For example, solid tumours tend to have central hypoxic regions (low oxygen) , which means that the singlet oxygen PDT mechanism cannot work if there is no oxygen.

    He credits this incredible opportunity to work in Dr. McFarland’s lab to the transferable job-specific skills he gained as a research topics student starting in 2012. He found that the two research topics courses he took not only opened the door for him to work in the lab he continued to work in as a graduate, but also gave him the opportunity to transfer what he’d learned in class to independent work in the lab. He describes research topics courses as a way for students to get over the significant hurdle they face where most entry-level research jobs in the sciences require several years of lab experience just to get started. These courses also provide students with a sample of what a researcher’s life is like, leading Marc to his most surprising find: the pure workload of doing research. Much time is devoted to making hypotheses, testing them, and attempting to learn something from the results, whether they support the hypothesis or disprove it. In addition, a lot of time is spent mastering experimental skills and trying things that may not work the first time. Then every meticulously planned out and executed experiment is often run in triplicate with controls and, depending on the experiment can lead to hours of work of analysing data.

    A research topics course also provides students with the opportunity to get to know their professors outside the classroom so as to learn more about their research and interests. This gives students the chance to see if a career in research appeals to them before they continue onto graduate school. And so, Marc finds he can’t speak highly enough about the incredible opportunity to do a research topics course at Acadia and hopes other students will feel encouraged to do so.

    The only significant drawback he experienced in his research career at Acadia was that since it is a smaller institution, it can be harder to get research funding than it would be for researchers at a larger institution. Funding agencies (and donors) tend to give their money to larger institutions despite the many excellent researchers at universities like Acadia, and Marc has at times felt like this has limited his ability to grow professionally. Overall though, his experience as a researcher at Acadia has been very positive and he continues to be inspired by the work he does in Dr. McFarland’s lab where he does the initial screening for the light activated antimicrobial drugs project. Some of the compounds that performed well in initial biological testing in this lab have even been licensed to a company in Ontario and are going through human clinical trials. While this is exciting, he warns that a career in research rarely comes with the many eureka moments depicted in media, and that patience is a necessity for a career in research. Some of the best discoveries often come from the “grind” of daily tasks. The hours can be long and the work at times seems redundant, but the satisfaction and personal validation that comes when an experiment finally works out makes the work worthwhile.

  • Acadia Physics and Mathematics Student Researchers Stand Out

    Long hours at the library and countless lectures pay off when you can produce a piece of work that’s exciting. Sometimes it can be helpful to learn about what other students are working on in order to not only understand what it means to be doing research while in your undergraduate degree, but also to gain inspiration from their triumphs. Take a look at some notable current students and the topics they studied.

     

    Physics Beyond the Standard Model: X plus and X minus

    Miriam Hewlett

    At present the Standard Model (SM) of particle physics is our best description of what occurs at the subatomic level, but it is known that this description is incomplete. Experiments investigating the possibility of new particles and interactions are some of the most prominent in modern physics. For this research the effects of additional vector bosons beyond the SM, X plus and X minus, on electron-positron collisions were examined at the tree level. Such collisions are outlined for Belle-II, an upcoming experiment at KEK. The X plus/minus model introduces direct CP violating phases in the coupling of X plus to anti-fermions and X minus to fermions. Results were calculated in Mathematica with the use of the Feyncalc package, and are in the form of exclusion plots displaying allowed ranges of physical parameters associated with the additional particles.

     

    Interval Estimation for Risk Analysis with Nonquantal Data

    Dewi Tanasia Saputra

    In the literature of low-dose risk assessment, Piegorsch et al. (2005) proposed five approaches to construct simultaneous confidence bounds with nonquantal data and they recommended Akahira’s Cornish-Fisher expansion method. In this thesis, a generalized confidence interval method proposed by Weerahandi (1995) is used to construct simultaneous confidence bounds for low-dose risk assessment when sample sizes are large. We apply small sample asymptotic methods to obtain interval inference for risk assessment. Simulation studies are conducted to compare their performances based on the coverage probability. The application of the proposed methods is demonstrated by a real data example.

     

    Bay of Fundy Tidal Power: Analysis of Tidal Velocity Data

    Dillon Burgess

    Models have indicated that 2500 MW of energy could be extracted from the tidal currents of the Bay of Fundy. Harnessing this energy has proved to be a difficult task, with the characteristics of the tidal currents needing to be analyzed and understood before a turbine can enter the water. Using a cabled Acoustic Doppler Current Profilers (ADCP), a year long data set of the tidal velocity at a location in Grand Passage was gathered. Unfortunately, the data sets have several data gaps, when the instrument malfunctioned. The ADCP data can be analysed by performing a harmonic analysis, which produces amplitudes and phases of the tidal constituents. Each tidal constituent represents how an aspect of the periodic change in the relative positions of the Earth, Moon and Sun contributes to the time series data. Tidal velocities can then be reconstructed with the results from the harmonic analysis to generate a continuous time series for a full year. The difference between the ADCP data and reconstructed data is used to analyse the component of the velocity that is not related to the tidal harmonics, as is likely turbulence.

     

    Design and Construction of an Excitation Spectrometer

    Ms. Alejandra Maria Fuentes

    One method to study the optical properties of materials is by optical excitation spectroscopy.  In excitation spectroscopy, a nearly monochromatic light source is used to irradiate the sample at different wavelengths, and a spectrometer is used to record the spectrum of the emitted light at each incident wavelength. Hence, both emission and excitation spectra are recorded at the same time.  An emission spectrum consists of the wavelength distribution of the light emitted by the sample, measured at a fixed excitation wavelength. On the other hand, an excitation spectrum is the light intensity emitted at a fixed emission wavelength, over a range of excitation wavelengths. Both spectroscopic methods are useful in studying optical transitions occurring in a material.  My project involved the design, construction, and calibration of an excitation spectrometer.  LABVIEW programs were written to automate the experimental apparatus (monochromator, beam blanker, spectrometer), as well as perform the data analysis.  The data could then be investigated in three dimensions: excitation wavelength, emission wavelength and intensity.  This excitation spectrometer was then used to study the luminescent properties of geological rock and powder specimens, and a liquid chlorophyll sample.

     

    Biomarker Identification for Dementia and Brain Tumour Tissue Characterization with Magnetic Resonance Imaging

    Thalia Magyar

    Magnetic resonance imaging (MRI) is useful for diagnosing brain disorders. For instance, it can be used for stroke, Alzheimer’s disease, multiple sclerosis (MS), and a host of other debilitating neurodegenerative disorders. Yet, the correlation between quantitative MRI metrics and tissue pathology is not yet fully developed. My research focusses on progress toward strengthening correlations through several analysis techniques I have developed. Images from different types of quantitative MR methods are distorted in different ways and image contrast can be different which makes voxel-by-voxel quantitative comparisons difficult. Multimodality images, for instance, position emission tomography images and MR images, are collected with different resolutions and the contrast within the images varies due to different tissue properties. I am developing robust image registration, that is, image aligning techniques, so that comparisons can be done. The Magnetic Resonance Microscopy Centre in Winnipeg now has the capability to perform simultaneous PET and MR imaging. Direct comparisons between cerebral flood flow maps and PET measurements can be done when the images are correctly registered. Direct comparison between MR image findings and histology are best done when the two types of images are co-registered. In my research I work toward these registrations and quantifying image comparisons on a voxel-by-voxel basis. I will demonstrate these methods on control samples as well as disease samples such as brain cancer and Parkinson’s disease.

     

    An Angular Analysis of the Rare B ! K*µ + µ- Decay Using AdS/QCD

    Ryan MacGibbon

    Using something called Anti de-sitter/Quantum Chromodynamics (AdS/QCD), you can predict the complete set of angular observables in the rare B ! K*µ + µ- decay using light-front holographic B ! K* transition form factors, just as you can with the traditional method of Lattice QCD. Light front holographic AdS/QCD is a relatively new and amazing technique that maps 4-dimensional non-perturbative QCD field theory to a dual gravity curved space string theory! This works because when fields under the quantum field theory are strong interacting, the ones using gravitational theory are weak interacting, and vice-versa. This means that we can use perturbation theory in this 5-dimensional dual gravity theory, then map it back to QCD field theory, where comparisons and further calculations can be made. Since perturbation theory is a more accurate method than nonperturbative methods, this will hopefully allow for better approximations for our particle interactions, resulting in greater precision in our decay models. We are applying this adapted AdS/QCD technique to B-Meson Physics, and more specifically in my case, to the angular observables of B Mesons! Angular observables are a neat tool for measuring the decay angles in different particle decay, and are a useful means of discovering New Physics and hopefully in the future, changing the Standard Model of Particle Physics and our understand on how the physical world works!!!

  • Cancer Can Kiss My Axe

    It is estimated that two in five Canadians will be told they have cancer in their lifetime. This is significant to us, and we are doing something about it, and you can help. Relay for Life has been a long-standing tradition here at Acadia University, as this year marks the fourteenth year students and community members will fill the athletic complex in an effort to fight back against cancer.

    Relay for Life is a time for the community to come together and support one another and is also the biggest fundraiser for the Canadian Cancer Society. In the past fourteen years Acadia University has raised over $800,000.00, which has helped the Canadian Cancer Society do four important things; lead cancer research across Canada, influence public policy to improve health the of Canadians, support cancer patients, survivors and caregivers through various programs such as the Lodge That Gives and Camp Goodtime, and engage more Canadians in the fight against cancer. This year we hope to add another $35,000.00 to that total.

    Each of us has been affected by cancer in our own way, which influences why we relay, and we want you to come out on April 1st to share why you relay! This year Relay for Life at Acadia will be a six-hour event, running from six o’clock to midnight. Throughout the evening there will be many activities and snacks to keep you going, such as the always-popular bouncy castle and a dodge ball competition.

    Whether you are cheering on survivors, walking the track, passing the baton to your teammate or joining in exciting trackside activities, Relay For Life is more than just a cancer walk – it’s a journey that will help many in our community and throughout Canada and we hope to see you there! If you haven’t already registered for the event, registration is still open for teams, individuals and survivors, we also encourage all cancer survivors on campus to register and join us for our survivor reception on the evening of Relay. Registration can be completed at relayforlife.ca.

    If you need any more of an incentive to fundraise for a great cause, this year we are excited to announce that for every 200 dollars you raise, you will earn a ballot with your name on it for a chance to win $500.00! So grab your friends, family and neighbours, tell your story, and get out there and do some fundraising!

    If you have any questions about Relay for Life here at Acadia University, the Committee will be happy to answer them and can be contacted at acadia.relayforlife.ca

    We look forward to seeing you all out supporting Relay for Life on April 1s!  Cancer affects us all in some way or another, let’s show our school spirit and fight back.

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